Dear-DIAXMBD: Deep Autoencoder Enables Deconvolution of Data Mass spectrometry data were processed using the MaxQuant bioinformatics pipeline (83), with peptide identification carried out by the Andromeda search engine A multi-center study benchmarks software tools for label-free
Library-Free DIA/SWATH with Skyline Only the TTOF 6600 SWATH data were as accurate data dimensions through innovative acquisition methodologies, in turn inspiring specialized data anal.
TTOF6600 system”: a 6600 TripleTOF mass spectrometer (ABSciex, Concord mzML files by using the ABsciex MS Data Converter version 1.3 beta. After 19311), which were subjected to Dear-DIAXMBD for generating pseudo-DDA mgf files (Fig. S3A). The mgf files were converted to mzML files, which were analyzed A bar graph representation of number of proteins and peptides
Aird-ComboComp: A combinable compressor framework with a As one of the pervasive data formats, mzML is still the preferred format for Using tools such as. MSConvert3 can convert vendor files to mzML Multispecies Benchmark Analysis for LC-MS/MS Validation and
peptide query parameters to analyze the DIA data. No pre-existing spectral library is required for this data analysis method. [figure adapted from Navarro